JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRCIN1_chr17_38525031_38610952	0/0	t0026	3514	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0027	3514	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0028	3514	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0029	3514	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0030	3514	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0031	3515	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0032	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0033	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0034	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0035	3514	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0036	3514	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0037	3515	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0038	3515	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0039	3516	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0040	3516	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0041	3517	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0042	3514	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0043	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0044	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0045	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0046	3517	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0047	3517	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0048	3517	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0049	3516	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0050	3516	1	0	0	0	1	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0051	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0052	3513	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRC_chr20_37341140_37411050	1/1	t0001	3034	146	25	40	51	8	20	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0002	3033	16	6	1	9	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0003	3033	15	6	0	9	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0004	3034	15	5	0	10	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0005	3033	7	7	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0006	3034	6	2	1	0	2	1	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0007	3034	6	6	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0008	3033	5	0	0	5	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0009	3033	5	5	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0010	3032	4	3	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0011	3033	4	1	0	0	0	3	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0012	3033	4	0	0	4	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0013	3032	3	3	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0014	3034	2	0	0	2	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0015	3032	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0016	3034	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0017	3033	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0018	3033	2	1	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0019	3034	2	0	0	0	0	2	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0020	3032	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0021	3034	1	0	0	1	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0022	3032	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0023	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050