JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRC_chr20_37341140_37411050	0/0	t0024	3032	1	0	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0025	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0026	3033	1	0	0	1	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0027	3048	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0028	3033	1	0	0	0	0	1	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0029	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0030	3034	1	0	0	1	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0031	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0032	3034	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0033	3013	1	0	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0034	3013	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0035	3033	1	0	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0036	3034	1	0	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0037	3034	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0038	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0039	3032	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0040	3032	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0041	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0042	3034	1	0	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0043	3034	1	0	1	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0044	3034	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0045	3034	1	0	0	0	0	1	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0046	3034	1	0	0	1	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0047	3032	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0048	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0049	3032	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0050	3033	1	0	0	1	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0051	3033	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	t0052	3033	1	0	0	1	0	0	copy fasta	SRC	chr20	37341140	37411050
SRD5A1_chr5_6628440_6679386	0/0	t0001	6256	70	3	6	52	2	7	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0002	6256	45	1	14	24	2	4	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0003	6256	20	5	7	3	0	5	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0004	6256	18	0	2	15	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/1	t0005	6256	15	0	8	0	3	3	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0006	6256	14	0	4	9	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0007	6256	14	1	0	13	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0008	6256	9	0	5	1	3	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0009	6256	8	0	0	8	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0010	6256	8	0	0	7	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0011	6255	7	7	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0012	6256	6	2	2	2	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0013	6261	6	0	0	5	1	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0014	6256	6	2	1	0	0	3	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0015	6255	5	5	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0016	6260	5	0	0	5	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0017	6256	4	0	2	2	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0018	6256	4	0	1	2	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0019	6256	4	0	0	1	1	2	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0020	6256	4	0	0	4	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0021	6256	4	3	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386