JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRD5A1_chr5_6628440_6679386	0/0	t0022	6255	4	3	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0023	6256	3	0	0	0	0	3	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0024	6256	3	0	0	3	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0025	6256	3	0	3	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0026	6256	3	2	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0027	6256	3	0	0	2	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0028	6254	3	3	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0029	6256	3	0	1	0	0	2	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0030	6255	3	3	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0031	6255	3	3	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0032	6255	3	3	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0033	6256	2	0	1	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0034	6256	2	0	0	2	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0035	6256	2	0	0	0	0	2	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	1/0	t0036	6256	2	0	0	0	1	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0037	6256	2	2	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0038	6252	2	0	0	0	1	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0039	6255	2	1	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0040	6256	2	0	0	2	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0041	6256	2	2	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0042	6254	2	1	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0043	6256	2	2	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0044	6256	2	2	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0045	6256	2	2	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0046	6255	2	2	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0047	6256	2	0	2	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0048	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0049	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0050	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0051	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0052	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0053	6256	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0054	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0055	6256	1	0	0	0	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0056	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0057	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0058	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0059	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0060	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0061	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0062	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0063	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0064	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0065	6261	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0066	6256	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0067	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0068	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0069	6287	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0070	6261	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0071	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386