JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRD5A1_chr5_6628440_6679386	0/0	t0072	6254	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0073	6255	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0074	6257	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0075	6259	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0076	6250	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0077	6250	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0078	6250	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0079	6258	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0080	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0081	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0082	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0083	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0084	6253	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0085	6260	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0086	6257	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0087	6256	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0088	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0089	6256	1	0	0	0	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0090	6256	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0091	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0092	6256	1	0	0	0	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0093	6254	1	0	0	0	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0094	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0095	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0096	6261	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0097	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0098	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0099	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0100	6254	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0101	6254	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0102	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0103	6255	1	0	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0104	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0105	6256	1	0	0	0	0	1	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0106	6257	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0107	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0108	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0109	6254	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0110	6256	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0111	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0112	6256	1	0	0	1	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	t0113	6255	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A2_chr2_31517480_31585938	1/0	t0001	3755	284	64	52	134	9	24	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/1	t0002	3773	47	4	8	28	2	4	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0003	3755	9	0	7	0	0	2	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0004	3791	5	4	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0005	3793	3	3	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0006	3755	3	3	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0007	3755	3	2	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0008	3755	3	0	0	3	0	0	copy fasta	SRD5A2	chr2	31517480	31585938