JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRD5A2_chr2_31517480_31585938	0/0	t0009	3774	2	2	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0010	3795	2	2	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0011	3795	2	2	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0012	3755	2	2	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0013	3771	2	0	0	0	0	2	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0014	3775	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0015	3797	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0016	3789	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0017	3755	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0018	3755	1	0	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0019	3755	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0020	3755	1	0	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0021	3755	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0022	3755	1	0	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0023	3755	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0024	3755	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0025	3755	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0026	3755	1	0	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0027	3755	1	0	0	0	1	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0028	3803	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0029	3799	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0030	3797	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0031	3794	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	t0032	3771	1	0	1	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A3_chr4_55341242_55378100	0/0	t0001	3102	69	1	21	41	1	5	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0002	3084	63	11	6	26	2	18	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0003	3107	31	0	9	18	1	3	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	1/1	t0004	3105	23	3	7	6	5	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0005	3109	14	4	5	3	1	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0006	3104	12	1	2	7	0	2	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0007	3085	11	1	5	5	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0008	3103	10	0	1	9	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0009	3106	10	5	1	3	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0010	3108	9	0	1	5	0	3	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0011	3092	8	5	0	0	0	3	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0012	3085	7	7	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0013	3106	7	2	0	5	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0014	3103	6	0	0	6	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0015	3103	5	5	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0016	3113	5	5	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0017	3102	5	1	3	0	1	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0018	3084	5	0	2	0	3	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0019	3092	4	4	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0020	3107	4	4	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0021	3111	4	0	0	4	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0022	3110	4	3	0	0	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0023	3084	4	4	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0024	3105	3	0	2	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0025	3108	3	3	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0026	3101	2	0	0	2	0	0	copy fasta	SRD5A3	chr4	55341242	55378100