JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRD5A3_chr4_55341242_55378100	0/0	t0027	3104	2	2	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0028	3104	2	0	0	1	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0029	3106	2	0	0	2	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0030	3111	2	2	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0031	3121	2	2	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0032	3106	2	0	0	0	0	2	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0033	3084	2	1	0	0	1	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0034	3084	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0035	3093	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0036	3102	1	0	0	0	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0037	3108	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0038	3086	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0039	3090	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0040	3090	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0041	3096	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0042	3097	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0043	3101	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0044	3104	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0045	3103	1	0	0	0	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0046	3103	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0047	3105	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0048	3107	1	0	0	0	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0049	3107	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0050	3108	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0051	3107	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0052	3108	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0053	3110	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0054	3110	1	0	0	0	0	1	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0055	3110	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0056	3114	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0057	3113	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0058	3114	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0059	3113	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0060	3115	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0061	3121	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0062	3100	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0063	3102	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0064	3102	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0065	3107	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0066	3109	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0067	3112	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0068	3084	1	0	0	0	1	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0069	3085	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0070	3084	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0071	3084	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0072	3087	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0073	3088	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0074	3088	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	t0075	3094	1	0	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SREBF1_chr17_17806334_17841986	0/0	t0001	1455	170	28	30	83	4	25	copy fasta	SREBF1	chr17	17806334	17841986