JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SREBF1_chr17_17806334_17841986	0/0	t0002	1458	58	7	28	13	6	4	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0003	1455	10	0	0	10	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/1	t0004	1455	10	9	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0005	1456	9	9	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0006	1456	7	0	1	5	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0007	1457	6	0	1	2	3	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0008	1453	6	3	1	1	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0009	1455	6	4	2	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0010	1455	5	0	0	4	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0011	1456	5	4	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0012	1455	4	4	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0013	1459	4	2	0	1	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	1/0	t0014	1458	4	0	2	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0015	1459	4	3	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0016	1456	3	3	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0017	1454	3	3	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0018	1455	3	0	0	2	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0019	1453	2	0	1	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0020	1458	2	1	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0021	1456	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0022	1455	2	1	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0023	1456	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0024	1457	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0025	1454	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0026	1454	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0027	1455	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0028	1458	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0029	1456	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0030	1453	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0031	1458	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0032	1455	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0033	1456	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0034	1458	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0035	1455	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0036	1458	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0037	1455	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0038	1458	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0039	1456	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0040	1456	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0041	1454	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0042	1457	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0043	1457	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0044	1454	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0045	1456	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0046	1456	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0047	1454	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	t0048	1455	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF2_chr22_41828105_41912305	1/0	t0001	1812	175	9	25	109	11	20	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0002	1812	54	11	18	9	1	15	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0003	1812	37	30	7	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305