Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLNK_chr10_96184171_96276569	0/0	t0014	2975	5	0	0	3	0	2	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0015	2977	5	4	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0016	2980	4	0	0	1	1	2	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0017	2982	3	0	1	2	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0018	2978	3	0	0	0	1	2	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0019	2973	2	0	0	2	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0020	2979	2	0	1	0	1	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0021	2979	2	2	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0022	2974	2	2	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0023	2979	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0024	2980	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0025	2980	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0026	2977	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0027	2977	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0028	2980	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0029	2983	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0030	2979	1	0	0	1	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0031	2982	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0032	2976	1	0	0	0	0	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0033	2978	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0034	2981	1	0	0	0	0	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0035	2978	1	0	0	0	1	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0036	2977	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0037	2974	1	0	0	1	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0038	2980	1	0	0	1	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0039	2974	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0040	2976	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0041	2973	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0042	2976	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0043	2974	1	0	0	0	0	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0044	2980	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0045	2980	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0046	2980	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0047	2979	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0048	2976	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLOC1S1_chr12_55711046_55724703	1/1	t0001	101	399	84	73	186	14	40	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	t0002	101	11	10	1	0	0	0	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S2_chr10_100268293_100291680	1/1	t0001	2191	204	31	57	71	11	32	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0002	2192	58	12	4	40	0	2	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0003	2194	30	7	5	13	1	4	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0004	2193	20	5	0	12	0	3	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0005	2193	17	16	1	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0006	2194	9	2	0	5	2	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0007	2194	8	6	2	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0008	2191	5	5	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0009	2193	5	0	0	5	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0010	2191	3	0	0	3	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0011	2193	2	0	0	2	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0012	2191	2	0	0	2	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0013	2195	2	1	0	1	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680