JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SREBF2_chr22_41828105_41912305	0/1	t0004	1812	24	2	5	11	2	3	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0005	1819	8	6	2	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0006	1808	6	6	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0007	1808	6	6	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0008	1812	4	4	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0009	1808	4	3	1	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0010	1812	3	3	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0011	1812	2	2	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0012	1812	2	0	1	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0013	1812	2	2	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0014	1808	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0015	1812	1	0	1	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0016	1812	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0017	1812	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0018	1812	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0019	1812	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0020	1832	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0021	1819	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	t0022	1812	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREK1IP1_chr5_64713148_64773691	0/0	t0001	6412	69	6	17	33	3	10	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	1/1	t0002	6411	56	1	23	22	4	4	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0003	6412	48	13	2	30	0	3	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0004	6411	45	1	2	36	0	6	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0005	6412	19	16	3	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0006	6410	13	1	8	1	1	2	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0007	6413	10	0	0	10	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0008	6409	8	8	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0009	6411	6	6	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0010	6409	6	6	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0011	6411	6	0	0	5	0	1	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0012	6412	5	0	0	4	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0013	6409	3	3	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0014	6409	3	3	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0015	6412	2	2	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0016	6412	2	2	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0017	6412	2	2	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0018	6413	2	2	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0019	6411	2	2	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0020	6412	2	0	0	2	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0021	6412	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0022	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0023	6412	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0024	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0025	6412	1	0	0	0	0	1	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0026	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0027	6412	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0028	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0029	6411	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0030	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0031	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691