JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SREK1IP1_chr5_64713148_64773691	0/0	t0032	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0033	6410	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0034	6412	1	0	1	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0035	6412	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0036	6412	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0037	6410	1	0	0	0	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0038	6408	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0039	6409	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0040	6407	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0041	6412	1	0	0	0	0	1	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0042	6411	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0043	6411	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0044	6411	1	0	0	0	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0045	6412	1	0	1	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0046	6411	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0047	6411	1	0	0	0	0	1	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0048	6413	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0049	6412	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0050	6412	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0051	6411	1	0	1	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0052	6412	1	0	0	0	0	1	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	t0053	6411	1	0	0	0	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1_chr5_66139300_66188615	1/0	t0001	4825	111	12	20	55	6	17	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/1	t0002	4826	55	2	14	33	1	4	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0003	4823	45	4	9	32	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0004	4824	42	14	7	9	1	11	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0005	4827	26	2	4	15	0	5	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0006	4828	25	1	7	15	1	1	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0007	4824	12	12	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0008	4825	6	6	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0009	4822	5	4	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0010	4824	5	5	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0011	4824	5	5	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0012	4824	4	4	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0013	4822	4	0	0	4	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0014	4824	2	2	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0015	4825	2	2	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0016	4825	2	2	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0017	4825	2	2	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0018	4828	2	0	0	2	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0019	4825	2	2	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0020	4825	2	2	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0021	4825	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0022	4824	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0023	4824	1	0	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0024	4827	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0025	4822	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0026	4823	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0027	4825	1	0	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0028	4824	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615