JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SREK1_chr5_66139300_66188615	0/0	t0029	4823	1	0	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0030	4823	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0031	4826	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0032	4826	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0033	4826	1	0	0	0	0	1	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0034	4823	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0035	4825	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0036	4825	1	0	0	0	0	1	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0037	4825	1	0	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0038	4824	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0039	4824	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0040	4823	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0041	4823	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0042	4824	1	0	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0043	4823	1	0	1	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0044	4824	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0045	4826	1	0	0	0	1	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0046	4825	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	t0047	4827	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SRFBP1_chr5_121956975_122033633	1/0	t0001	1566	172	66	31	51	2	21	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0002	1566	17	0	2	15	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0003	1566	14	1	7	3	2	1	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0004	1566	7	7	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0005	1564	7	4	2	0	1	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0006	1566	3	3	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0007	1566	2	2	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0008	1566	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0009	1566	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0010	1566	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/1	t0011	1566	1	0	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0012	1566	1	0	0	1	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	t0013	1567	1	0	0	0	1	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRF_chr6_43166269_43186506	1/0	t0001	2705	194	48	35	74	10	26	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0002	2705	89	8	13	61	2	5	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/1	t0003	2705	11	0	6	2	0	2	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0004	2705	10	10	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0005	2705	10	9	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0006	2705	9	6	3	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0007	2705	7	6	1	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0008	2705	6	0	0	6	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0009	2705	3	0	0	3	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0010	2705	3	3	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0011	2705	2	0	0	2	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0012	2705	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0013	2705	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0014	2705	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0015	2705	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0016	2705	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0017	2705	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0018	2705	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506