JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRF_chr6_43166269_43186506	0/0	t0019	2705	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0020	2689	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0021	2705	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0022	2705	1	0	0	0	0	1	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	t0023	2705	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRGAP1_chr12_63839700_64167217	0/0	t0001	19667	5	5	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0002	19663	4	4	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0003	19663	4	0	2	2	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0004	19662	2	0	1	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0005	19651	2	2	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0006	19728	2	1	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0007	19727	2	1	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0008	19663	2	2	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0009	19672	2	0	0	0	0	2	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0010	19675	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0011	19734	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0012	19715	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0013	19664	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0014	19663	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0015	19652	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0016	19704	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0017	19716	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0018	19662	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0019	19704	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0020	19658	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0021	19664	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0022	19707	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0023	19665	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0024	19664	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0025	19663	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0026	19663	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0027	19663	1	0	0	0	0	1	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0028	19663	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0029	19657	1	0	0	0	0	1	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0030	19661	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0031	19663	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0032	19666	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0033	19663	1	0	0	0	0	1	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0034	19664	1	0	0	0	1	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0035	19670	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	1/0	t0036	19663	1	0	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0037	19664	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0038	19662	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0039	19663	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0040	19664	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0041	19663	1	0	0	1	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0042	19663	1	0	0	0	1	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0043	19663	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0044	19663	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0045	19663	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217