JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRGAP1_chr12_63839700_64167217	0/0	t0146	19669	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0147	19668	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0148	19669	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0149	19715	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0150	19657	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0151	19671	1	0	0	0	0	1	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0152	19664	1	0	0	0	1	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0153	19663	1	0	0	0	0	1	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	t0154	19673	1	0	0	0	0	1	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP2B_chr1_144882288_145100328	0/1	t0001	5521	29	0	10	13	2	3	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	1/0	t0002	5521	7	0	1	3	0	2	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0003	5523	3	0	1	0	1	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0004	5521	2	0	0	0	0	2	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0005	5522	2	0	0	1	0	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0006	5521	1	0	1	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0007	5521	1	0	0	1	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0008	5521	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0009	5521	1	0	1	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0010	5521	1	0	0	1	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0011	5521	1	0	0	1	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0012	5522	1	0	0	0	1	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0013	5522	1	0	1	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0014	5523	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0015	5523	1	0	1	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0016	5523	1	0	0	0	0	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0017	5521	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	t0018	5521	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2C_chr1_121179975_121397874	0/0	t0001	5712	109	26	19	40	9	15	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0002	5712	53	7	17	12	5	12	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0003	5712	19	0	0	19	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0004	5704	10	10	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0005	5712	6	1	1	0	0	4	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0006	5713	6	6	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0007	5712	5	0	1	4	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0008	5711	4	3	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0009	5703	4	4	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	1/1	t0010	5712	3	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0011	5713	3	2	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0012	5712	2	0	0	0	0	2	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0013	5711	2	0	2	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0014	5712	2	0	2	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0015	5712	2	0	0	2	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0016	5713	2	0	1	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0017	5712	2	2	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0018	5711	2	2	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0019	5703	2	2	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0020	5712	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0021	5711	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0022	5710	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0023	5711	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874