JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRGAP2C_chr1_121179975_121397874	0/0	t0024	5711	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0025	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0026	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0027	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0028	5712	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0029	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0030	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0031	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0032	5712	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0033	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0034	5712	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0035	5713	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0036	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0037	5712	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0038	5711	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0039	5712	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0040	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0041	5711	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0042	5710	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0043	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0044	5712	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0045	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0046	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0047	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0048	5712	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0049	5712	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0050	5712	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0051	5713	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0052	5704	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0053	5704	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0054	5703	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	t0055	5704	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2_chr1_206198541_206469436	0/1	t0001	3662	45	14	9	12	2	7	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0002	3668	29	0	10	14	1	4	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0003	3669	22	10	7	3	0	2	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0004	3667	13	12	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0005	3668	8	8	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0006	3673	7	0	0	7	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0007	3664	6	6	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0008	3667	5	4	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0009	3667	4	4	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0010	3672	3	3	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0011	3669	3	0	3	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0012	3666	3	0	0	1	0	2	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0013	3664	3	1	1	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0014	3663	3	2	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0015	3670	2	0	1	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0016	3671	2	0	0	0	0	2	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	1/0	t0017	3669	2	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0018	3669	2	0	0	0	0	2	copy fasta	SRGAP2	chr1	206198541	206469436