JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRGAP2_chr1_206198541_206469436	0/0	t0019	3662	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0020	3672	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0021	3672	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0022	3670	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0023	3669	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0024	3668	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0025	3669	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0026	3668	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0027	3666	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0028	3665	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0029	3663	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0030	3663	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0031	3662	1	0	0	0	0	1	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0032	3662	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0033	3671	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0034	3666	1	0	0	0	1	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0035	3668	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0036	3662	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0037	3668	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	t0038	3662	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP3_chr3_8975591_9254646	0/1	t0001	5624	67	6	18	29	4	9	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0002	5623	43	10	6	24	2	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0003	5624	15	0	1	14	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0004	5624	8	8	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0005	5624	7	7	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0006	5624	6	0	4	0	1	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0007	5623	6	6	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0008	5623	4	0	3	0	1	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0009	5624	4	3	1	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0010	5624	3	0	3	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0011	5623	3	0	1	0	0	2	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0012	5623	3	3	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0013	5624	3	1	1	0	1	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0014	5624	3	3	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0015	5624	3	3	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0016	5623	3	0	0	3	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0017	5624	3	3	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0018	5623	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0019	5624	2	0	0	2	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0020	5624	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0021	5625	2	0	0	2	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0022	5623	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0023	5623	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0024	5624	2	0	0	0	0	2	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0025	5623	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0026	5623	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0027	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0028	5624	1	0	0	0	0	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0029	5623	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0030	5624	1	0	1	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646