JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRGAP3_chr3_8975591_9254646	0/0	t0031	5625	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0032	5623	1	0	0	0	1	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0033	5624	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0034	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	1/0	t0035	5624	1	0	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0036	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0037	5624	1	0	0	0	1	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0038	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0039	5624	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0040	5624	1	0	0	0	0	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0041	5623	1	0	1	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0042	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0043	5624	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0044	5624	1	0	0	0	1	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0045	5623	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0046	5623	1	0	0	0	0	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0047	5623	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0048	5624	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0049	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0050	5623	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0051	5623	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0052	5624	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	t0053	5623	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGN_chr10_69083103_69109805	0/1	t0001	740	162	24	30	83	10	14	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0002	740	130	24	15	77	2	12	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0003	741	49	20	13	4	6	6	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0004	740	33	6	4	14	0	9	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0005	740	9	7	2	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0006	739	8	0	0	8	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0007	739	6	6	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0008	741	5	4	1	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	1/0	t0009	741	3	2	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0010	740	2	0	0	0	0	2	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0011	740	1	0	1	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0012	740	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	t0013	740	1	0	0	0	0	1	copy fasta	SRGN	chr10	69083103	69109805
SRI_chr7_88200115_88225038	1/1	t0001	1376	287	26	46	161	11	41	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0002	1376	92	44	23	19	5	1	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0003	1376	15	15	0	0	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0004	1376	2	0	1	1	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0005	1376	2	1	1	0	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0006	1376	2	2	0	0	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0007	1376	1	0	0	1	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	t0008	1376	1	0	1	0	0	0	copy fasta	SRI	chr7	88200115	88225038
SRL_chr16_4184374_4247080	0/1	t0001	2793	144	20	37	56	6	24	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0002	2793	47	1	2	43	0	1	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	1/0	t0003	2793	29	1	6	17	4	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0004	2793	25	8	9	0	4	4	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0005	2793	19	0	8	7	2	2	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0006	2793	11	11	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080