Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLOC1S2_chr10_100268293_100291680	0/0	t0014	2194	2	2	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0015	2191	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0016	2194	1	0	0	1	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0017	2180	1	0	0	1	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0018	2193	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0019	2191	1	0	0	1	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0020	2192	1	0	0	1	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0021	2191	1	0	0	0	0	1	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0022	2193	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0023	2194	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0024	2193	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	t0025	2191	1	0	1	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S3_chr19_45173784_45186800	1/1	t0001	1953	238	25	54	118	11	28	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0002	1954	77	13	8	42	2	12	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0003	1952	14	3	2	8	0	1	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0004	1952	12	10	2	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0005	1953	10	0	0	10	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0006	1955	10	2	2	5	0	1	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0007	1954	9	8	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0008	1962	8	7	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0009	1964	4	0	2	0	1	1	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0010	1963	3	0	2	0	0	1	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0011	1953	3	3	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0012	1953	3	3	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0013	1954	3	3	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0014	1963	3	3	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0015	1972	3	3	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0016	1955	2	2	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0017	1952	2	1	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0018	1954	2	2	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0019	1953	2	2	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0020	1971	2	2	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0021	1974	2	2	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0022	1953	1	0	0	1	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0023	1962	1	0	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0024	1965	1	0	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0025	1952	1	0	0	1	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0026	1953	1	0	0	1	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0027	1953	1	0	0	1	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0028	1953	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0029	1953	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0030	1954	1	0	0	1	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0031	1954	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0032	1954	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0033	1963	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0034	1973	1	0	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	t0035	1977	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S4_chr4_6711174_6722664	0/0	t0001	834	220	16	46	130	8	20	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	1/1	t0002	838	191	54	25	83	6	21	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0003	838	18	10	3	1	1	3	copy fasta	BLOC1S4	chr4	6711174	6722664