JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRL_chr16_4184374_4247080	0/0	t0007	2793	10	9	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0008	2793	9	9	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0009	2793	7	7	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0010	2793	6	6	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0011	2793	4	4	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0012	2793	4	4	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0013	2793	3	1	2	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0014	2793	3	1	0	2	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0015	2793	3	3	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0016	2793	2	0	0	0	0	2	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0017	2793	2	0	1	0	0	1	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0018	2793	2	0	0	2	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0019	2793	2	0	0	2	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0020	2793	2	0	2	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0021	2793	1	0	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0022	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0023	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0024	2793	1	0	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0025	2793	1	0	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0026	2793	1	0	0	0	0	1	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0027	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0028	2793	1	0	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0029	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0030	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0031	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0032	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0033	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0034	2793	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0035	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0036	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0037	2793	1	0	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0038	2793	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0039	2793	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0040	2793	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0041	2793	1	0	1	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0042	2793	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0043	2793	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	t0044	2793	1	0	0	0	0	1	copy fasta	SRL	chr16	4184374	4247080
SRMS_chr20_63533489_63552749	0/0	t0001	2616	147	2	24	106	3	12	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0002	2616	47	45	2	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	1/1	t0003	2616	36	0	19	0	6	9	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0004	2616	20	19	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0005	2616	16	0	6	1	4	5	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0006	2616	13	0	0	0	0	13	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0007	2616	12	0	9	0	3	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0008	2616	7	0	0	7	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0009	2616	5	5	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0010	2616	4	1	1	2	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0011	2616	4	0	1	3	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0012	2616	3	0	0	3	0	0	copy fasta	SRMS	chr20	63533489	63552749