JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRMS_chr20_63533489_63552749	0/0	t0013	2616	3	2	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0014	2616	3	3	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0015	2616	3	0	0	0	0	3	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0016	2616	2	0	0	2	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0017	2617	2	0	0	1	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0018	2616	2	2	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0019	2616	2	1	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0020	2616	2	0	1	0	1	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0021	2616	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0022	2616	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0023	2616	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0024	2616	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0025	2617	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0026	2616	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0027	2616	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0028	2616	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0029	2616	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0030	2616	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0031	2617	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0032	2616	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0033	2616	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0034	2617	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0035	2616	1	0	0	0	1	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0036	2646	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0037	2616	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0038	2616	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0039	2616	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0040	2616	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0041	2616	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0042	2616	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	t0043	2616	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRM_chr1_11049589_11065018	1/1	t0001	352	343	91	66	130	8	46	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	t0002	352	1	1	0	0	0	0	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	t0003	352	1	1	0	0	0	0	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	t0004	352	1	1	0	0	0	0	copy fasta	SRM	chr1	11049589	11065018
SRP14_chr15_40030690_40044181	1/1	t0001	709	373	88	49	198	10	26	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0002	709	38	6	12	2	6	12	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0003	709	9	1	1	7	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0004	709	2	1	1	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0005	709	1	0	0	1	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0006	709	1	0	1	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0007	709	1	1	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	t0008	709	1	1	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP19_chr5_112856287_112874788	0/1	t0001	2342	158	3	31	95	6	22	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	1/0	t0002	2342	43	3	12	19	2	6	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0003	2342	34	17	9	0	2	6	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0004	2342	32	0	3	29	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0005	2342	27	12	1	14	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0006	2342	14	3	3	4	1	3	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0007	2342	11	9	2	0	0	0	copy fasta	SRP19	chr5	112856287	112874788