JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRP19_chr5_112856287_112874788	0/0	t0008	2342	10	10	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0009	2342	9	9	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0010	2342	8	7	1	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0011	2342	7	0	0	7	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0012	2342	6	6	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0013	2342	5	1	3	0	1	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0014	2342	5	0	0	5	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0015	2343	3	1	2	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0016	2341	3	3	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0017	2342	2	0	0	2	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0018	2342	2	1	1	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0019	2342	2	2	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0020	2338	2	0	0	2	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0021	2342	2	0	0	0	0	2	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0022	2342	2	0	0	0	0	2	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0023	2342	2	1	1	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0024	2342	1	0	0	0	0	1	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0025	2342	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0026	2342	1	0	0	0	0	1	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0027	2342	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0028	2342	1	0	1	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0029	2342	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0030	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0031	2342	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0032	2342	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0033	2342	1	0	0	0	0	1	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0034	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0035	2341	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0036	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0037	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0038	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0039	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0040	2338	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0041	2342	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	t0042	2342	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP54_chr14_34977992_35034567	1/0	t0001	673	136	48	26	43	3	15	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/1	t0002	673	132	15	28	72	7	9	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	t0003	673	93	16	10	53	2	12	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	t0004	673	33	2	15	4	2	10	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	t0005	673	1	1	0	0	0	0	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	t0006	673	1	0	1	0	0	0	copy fasta	SRP54	chr14	34977992	35034567
SRP68_chr17_76033785_76077517	1/0	t0001	948	182	52	32	72	5	20	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0002	948	161	34	34	76	6	11	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0003	948	5	4	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0004	948	5	0	0	5	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0005	948	4	0	0	0	3	1	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0006	948	3	0	0	3	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0007	948	2	2	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0008	948	1	0	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	t0009	948	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517