JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRP68_chr17_76033785_76077517	0/0	t0010	948	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP72_chr4_56462617_56508681	1/1	t0001	1840	135	28	28	50	10	17	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0002	1838	55	2	1	44	0	8	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0003	1812	43	4	4	30	3	2	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0004	1844	33	1	10	18	3	1	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0005	1844	31	0	0	31	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0006	1812	18	17	1	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0007	1842	15	5	7	0	0	3	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0008	1842	9	0	6	0	2	1	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0009	1840	6	6	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0010	1842	6	6	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0011	1842	4	4	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0012	1842	4	1	0	3	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0013	1846	3	1	0	2	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0014	1842	3	3	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0015	1840	3	2	0	0	0	1	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0016	1839	3	2	1	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0017	1846	2	0	2	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0018	1842	2	1	1	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0019	1844	2	2	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0020	1812	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0021	1840	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0022	1870	1	0	0	1	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0023	1846	1	0	0	1	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0024	1840	1	0	1	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0025	1812	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0026	1844	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0027	1838	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0028	1840	1	0	0	0	0	1	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0029	1842	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	t0030	1808	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP9_chr1_225772826_225795464	1/0	t0001	1221	301	79	63	127	12	19	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/1	t0002	1221	103	14	13	56	1	18	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0003	1221	34	0	3	30	1	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0004	1221	12	1	3	5	0	3	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0005	1221	7	0	0	7	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0006	1221	6	0	0	6	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0007	1221	3	0	0	3	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0008	1221	2	0	0	0	0	2	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0009	1221	1	0	0	1	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0010	1221	1	0	0	1	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0011	1221	1	0	1	0	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0012	1221	1	1	0	0	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0013	1221	1	1	0	0	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRP9_chr1_225772826_225795464	0/0	t0014	1221	1	0	1	0	0	0	copy fasta	SRP9	chr1	225772826	225795464
SRPK1_chr6_35827966_35926098	1/1	t0001	2381	192	48	39	76	8	19	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0002	2372	99	24	19	39	4	13	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0003	2377	20	2	4	10	0	4	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0004	2377	11	7	0	3	0	1	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0005	2376	3	3	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098