JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRPK1_chr6_35827966_35926098	0/0	t0006	2381	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0007	2376	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0008	2373	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0009	2380	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0010	2381	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0011	2381	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0012	2381	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0013	2381	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0014	2381	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0015	2381	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0016	2381	1	0	0	0	0	1	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0017	2377	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0018	2377	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0019	2372	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0020	2381	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0021	2381	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	t0022	2381	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK2_chr7_105111374_105393921	1/0	t0001	1580	243	83	48	82	8	21	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0002	1580	15	0	13	0	0	2	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0003	1580	11	0	0	9	0	2	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0004	1580	4	0	2	2	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0005	1580	2	2	0	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0006	1580	2	0	2	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0007	1580	1	1	0	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0008	1580	1	0	0	1	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/1	t0009	1580	1	0	0	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0010	1580	1	0	0	0	0	1	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	t0011	1580	1	0	1	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK3_chrX_153776041_153790730	0/0	t0001	257	151	29	25	79	0	18	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	1/1	t0002	257	149	47	29	49	11	11	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	t0003	257	2	0	0	0	0	2	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	t0004	255	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	t0005	255	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	t0006	257	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	t0007	257	1	0	0	0	0	1	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	t0008	255	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPRA_chr11_126257938_126273895	0/0	t0001	1070	154	6	24	101	6	17	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	1/1	t0002	1070	92	50	20	7	8	5	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0003	1070	44	4	7	28	0	5	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0004	1070	34	8	5	15	0	6	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0005	1070	32	5	12	8	2	5	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0006	1070	14	0	1	13	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0007	1070	7	7	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0008	1070	6	6	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0009	1070	4	2	1	0	0	1	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0010	1070	2	0	0	2	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0011	1070	1	0	0	0	0	1	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0012	1070	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0013	1070	1	0	0	1	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0014	1070	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895