JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRPRA_chr11_126257938_126273895	0/0	t0015	1070	1	0	0	1	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0016	1070	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRA_chr11_126257938_126273895	0/0	t0017	1070	1	1	0	0	0	0	copy fasta	SRPRA	chr11	126257938	126273895
SRPRB_chr3_133800815_133826492	1/1	t0001	1761	265	58	46	117	11	31	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0002	1759	86	1	16	57	2	10	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0003	1762	21	17	2	2	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0004	1760	17	3	5	5	2	2	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0005	1761	17	1	5	8	1	2	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0006	1758	12	0	2	7	0	3	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0007	1761	7	7	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0008	1760	5	0	3	0	2	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0009	1762	3	3	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0010	1761	2	2	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0011	1761	1	0	1	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0012	1761	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0013	1760	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0014	1759	1	0	0	1	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0015	1758	1	0	0	1	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0016	1761	1	0	0	0	0	1	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0017	1761	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0018	1761	1	1	0	0	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0019	1761	1	0	0	1	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0020	1759	1	0	0	0	0	1	copy fasta	SRPRB	chr3	133800815	133826492
SRPRB_chr3_133800815_133826492	0/0	t0021	1760	1	0	0	1	0	0	copy fasta	SRPRB	chr3	133800815	133826492
SRPX2_chrX_100639199_100680788	0/0	t0001	5250	76	5	16	45	2	8	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/1	t0002	5251	65	19	13	22	2	8	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0003	5250	43	3	8	25	3	4	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0004	5250	25	8	4	10	0	3	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0005	5250	15	7	2	6	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0006	5250	9	0	1	6	0	2	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0007	5251	9	3	0	4	0	2	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0008	5251	7	0	7	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0009	5249	6	6	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0010	5249	5	5	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0011	5251	4	4	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	1/0	t0012	5249	4	3	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0013	5250	3	2	1	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0014	5249	2	2	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0015	5251	2	0	0	0	0	2	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0016	5249	2	0	1	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0017	5250	2	0	0	2	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0018	5251	2	0	0	1	0	1	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0019	5251	2	0	0	2	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0020	5252	2	0	0	0	2	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0021	5249	2	2	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0022	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0023	5249	1	0	1	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0024	5249	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0025	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0026	5250	1	0	0	0	1	0	copy fasta	SRPX2	chrX	100639199	100680788