JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRPX2_chrX_100639199_100680788	0/0	t0027	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0028	5249	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0029	5251	1	0	0	0	0	1	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0030	5251	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0031	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0032	5251	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0033	5250	1	0	1	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0034	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0035	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0036	5251	1	0	0	0	1	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0037	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0038	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0039	5250	1	0	1	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0040	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0041	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0042	5250	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0043	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0044	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0045	5250	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0046	5251	1	0	0	0	0	1	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0047	5251	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0048	5251	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0049	5252	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0050	5252	1	0	0	1	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0051	5251	1	1	0	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX2_chrX_100639199_100680788	0/0	t0052	5251	1	0	1	0	0	0	copy fasta	SRPX2	chrX	100639199	100680788
SRPX_chrX_38144339_38225871	0/1	t0001	452	235	64	43	91	8	28	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	1/0	t0002	452	18	0	2	6	3	6	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	t0003	452	3	0	3	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRPX_chrX_38144339_38225871	0/0	t0004	452	1	0	1	0	0	0	copy fasta	SRPX	chrX	38144339	38225871
SRRD_chr22_26478877_26499658	0/1	t0001	3001	233	43	40	114	10	25	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0002	2998	75	1	13	47	5	9	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	1/0	t0003	3001	55	22	8	20	0	4	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0004	3002	19	1	0	17	0	1	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0005	3001	11	10	1	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0006	3001	7	0	2	5	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0007	3001	5	5	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0008	3001	4	4	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0009	3002	4	0	0	4	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0010	3001	3	0	3	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0011	3002	3	1	2	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0012	3000	3	0	3	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0013	3000	3	0	0	3	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0014	3001	2	0	0	2	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0015	3001	2	0	0	2	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0016	3001	2	0	1	0	1	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0017	3001	2	2	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0018	3001	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0019	3001	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0020	3001	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658