JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRRD_chr22_26478877_26499658	0/0	t0021	3001	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0022	3001	1	0	0	1	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0023	3001	1	1	0	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0024	3001	1	0	1	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0025	2997	1	0	0	0	0	1	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0026	3001	1	0	0	1	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0027	3001	1	0	1	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0028	3001	1	0	0	0	0	1	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0029	3001	1	0	0	1	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0030	3002	1	0	0	1	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0031	3001	1	0	1	0	0	0	copy fasta	SRRD	chr22	26478877	26499658
SRRD_chr22_26478877_26499658	0/0	t0032	3001	1	0	0	0	0	1	copy fasta	SRRD	chr22	26478877	26499658
SRRM1_chr1_24638302_24678281	0/1	t0001	1022	156	25	30	72	8	20	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	1/0	t0002	1021	155	38	34	58	6	18	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0003	1022	24	22	2	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0004	1019	5	4	1	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0005	1022	4	2	2	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0006	1017	3	3	0	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0007	1022	2	0	0	2	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0008	1022	1	1	0	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0009	1022	1	1	0	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM1_chr1_24638302_24678281	0/0	t0010	1021	1	0	1	0	0	0	copy fasta	SRRM1	chr1	24638302	24678281
SRRM2_chr16_2747638_2776412	0/1	t0001	786	241	64	63	74	15	24	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0002	786	74	24	5	41	1	3	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	1/0	t0003	786	71	0	0	62	1	7	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0004	786	3	0	0	3	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0005	786	2	0	1	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0006	786	2	1	1	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0007	786	2	2	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0008	786	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0009	786	1	0	0	0	1	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0010	786	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0011	799	1	0	0	0	0	1	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0012	786	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0013	786	1	1	0	0	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM2_chr16_2747638_2776412	0/0	t0014	786	1	0	0	1	0	0	copy fasta	SRRM2	chr16	2747638	2776412
SRRM3_chr7_76196896_76292287	1/1	t0001	1656	227	51	44	80	13	37	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0002	1656	46	22	8	15	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0003	1656	35	4	6	23	1	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0004	1656	3	2	0	1	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0005	1656	3	3	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0006	1639	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0007	1656	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0008	1656	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0009	1656	1	0	0	0	0	1	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0010	1656	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0011	1656	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0012	1656	1	0	0	1	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0013	1656	1	0	0	1	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM3_chr7_76196896_76292287	0/0	t0014	1656	1	1	0	0	0	0	copy fasta	SRRM3	chr7	76196896	76292287