JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRRM3_chr7_76196896_76292287	0/0	t0015	1656	1	0	0	1	0	0	copy fasta	SRRM3	chr7	76196896	76292287
SRRM4_chr12_118976541_119168051	0/1	t0001	6594	13	0	4	6	1	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0002	6575	13	1	2	10	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0003	6598	12	1	1	2	0	8	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0004	6594	12	0	0	12	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0005	6582	12	0	3	8	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0006	6581	10	0	0	9	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	1/0	t0007	6596	8	0	1	4	0	2	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0008	6584	7	2	1	1	2	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0009	6580	7	2	0	5	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0010	6586	6	6	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0011	6598	6	0	0	4	1	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0012	6602	5	0	0	5	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0013	6586	5	0	0	5	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0014	6582	5	0	1	3	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0015	6594	4	0	0	4	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0016	6594	4	0	2	1	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0017	6583	4	0	1	3	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0018	6572	4	4	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0019	6568	4	4	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0020	6598	3	2	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0021	6582	3	0	1	1	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0022	6582	3	0	0	3	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0023	6581	3	0	0	2	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0024	6594	3	0	0	3	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0025	6582	3	0	1	1	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0026	6593	3	2	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0027	6586	3	3	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0028	6592	3	0	1	1	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0029	6583	3	0	0	3	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0030	6584	3	0	2	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0031	6594	3	0	2	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0032	6592	3	0	2	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0033	6593	2	1	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0034	6562	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0035	6568	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0036	6575	2	1	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0037	6582	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0038	6596	2	0	0	0	1	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0039	6582	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0040	6575	2	0	2	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0041	6584	2	0	0	0	1	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0042	6598	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0043	6591	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0044	6591	2	0	2	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0045	6588	2	2	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0046	6594	2	0	1	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0047	6582	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0048	6585	2	0	1	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0049	6585	2	0	2	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051