JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRRM4_chr12_118976541_119168051	0/0	t0050	6582	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0051	6582	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0052	6596	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0053	6586	2	1	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0054	6582	2	1	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0055	6580	2	0	0	2	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0056	6575	2	0	2	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0057	6576	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0058	6580	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0059	6576	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0060	6585	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0061	6583	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0062	6596	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0063	6602	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0064	6600	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0065	6611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0066	6594	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0067	6590	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0068	6587	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0069	6592	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0070	6586	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0071	6587	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0072	6583	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0073	6579	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0074	6577	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0075	6602	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0076	6586	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0077	6586	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0078	6584	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0079	6570	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0080	6573	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0081	6584	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0082	6584	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0083	6602	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0084	6600	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0085	6594	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0086	6596	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0087	6598	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0088	6580	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0089	6581	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0090	6582	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0091	6577	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0092	6577	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0093	6594	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0094	6584	1	0	0	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0095	6580	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0096	6576	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0097	6576	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0098	6576	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0099	6592	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051