Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLOC1S4_chr4_6711174_6722664	0/0	t0004	834	8	8	0	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0005	834	8	1	3	0	1	3	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0006	840	7	7	0	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0007	840	1	1	0	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0008	838	1	1	0	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0009	834	1	0	1	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0010	838	1	1	0	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0011	836	1	0	0	0	0	1	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	t0012	834	1	1	0	0	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S5_chr6_8008567_8069389	0/0	t0001	2097	109	4	20	70	4	11	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0002	2097	92	26	24	24	4	14	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0003	2096	66	11	17	32	0	6	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	1/1	t0004	2096	56	22	11	8	4	9	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0005	2097	15	11	1	0	0	3	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0006	2097	7	7	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0007	2096	5	5	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0008	2097	3	0	0	3	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0009	2097	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0010	2097	1	0	0	1	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0011	2097	1	0	1	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0012	2097	1	0	0	0	0	1	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0013	2097	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0014	2096	1	0	0	1	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0015	2096	1	0	0	1	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0016	2096	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0017	2096	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0018	2096	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	t0019	2096	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S6_chr15_45582379_45614708	1/1	t0001	3260	236	36	49	117	7	25	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0002	3260	47	6	8	23	2	8	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0003	3264	25	23	2	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0004	3264	15	13	2	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0005	3260	7	0	3	4	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0006	3260	4	0	3	0	1	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0007	3260	3	0	0	3	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0008	3260	2	0	0	2	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0009	3260	2	0	0	2	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0010	3260	2	0	0	2	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0011	3260	2	2	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0012	3260	1	0	0	1	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0013	3260	1	0	0	1	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0014	3264	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0015	3260	1	0	0	1	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0016	3260	1	0	0	0	0	1	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0017	3260	1	0	1	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0018	3260	1	0	0	1	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0019	3260	1	0	0	1	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0020	3264	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0021	3264	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0022	3264	1	0	1	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708