JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRRM4_chr12_118976541_119168051	0/0	t0100	6594	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0101	6586	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0102	6600	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0103	6604	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0104	6596	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0105	6600	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0106	6597	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0107	6600	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0108	6611	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0109	6589	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0110	6588	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0111	6588	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0112	6594	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0113	6596	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0114	6593	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0115	6584	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0116	6590	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0117	6580	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0118	6577	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0119	6581	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0120	6581	1	0	0	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0121	6583	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0122	6578	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0123	6577	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0124	6580	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0125	6596	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0126	6579	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0127	6575	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0128	6575	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0129	6584	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0130	6598	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0131	6586	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0132	6588	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0133	6588	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0134	6586	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0135	6637	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0136	6594	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0137	6578	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0138	6578	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0139	6586	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0140	6584	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0141	6582	1	0	0	0	1	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0142	6580	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0143	6558	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0144	6581	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0145	6594	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0146	6596	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0147	6590	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0148	6598	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0149	6588	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051