JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRRM4_chr12_118976541_119168051	0/0	t0150	6596	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0151	6594	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0152	6590	1	0	0	1	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0153	6582	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0154	6577	1	0	1	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0155	6566	1	0	0	0	0	1	copy fasta	SRRM4	chr12	118976541	119168051
SRRM4_chr12_118976541_119168051	0/0	t0156	6586	1	1	0	0	0	0	copy fasta	SRRM4	chr12	118976541	119168051
SRRM5_chr19_43607088_43619498	1/1	t0001	264	413	89	77	186	14	45	copy fasta	SRRM5	chr19	43607088	43619498
SRRM5_chr19_43607088_43619498	0/0	t0002	264	3	1	1	0	0	1	copy fasta	SRRM5	chr19	43607088	43619498
SRRT_chr7_100870103_100893664	1/1	t0001	360	281	87	37	113	10	32	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	t0002	360	131	4	32	73	6	16	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	t0003	360	4	1	1	0	2	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	t0004	360	2	2	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	t0005	360	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRRT_chr7_100870103_100893664	0/0	t0006	360	1	1	0	0	0	0	copy fasta	SRRT	chr7	100870103	100893664
SRR_chr17_2298950_2330260	1/1	t0001	1460	356	89	68	142	12	43	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0002	1460	7	0	0	7	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0003	1460	1	1	0	0	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0004	1460	1	1	0	0	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0005	1460	1	0	1	0	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0006	1460	1	0	0	1	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0007	1460	1	0	1	0	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0008	1460	1	1	0	0	0	0	copy fasta	SRR	chr17	2298950	2330260
SRR_chr17_2298950_2330260	0/0	t0009	1460	1	0	0	0	0	1	copy fasta	SRR	chr17	2298950	2330260
SRSF10_chr1_23959347_23985327	0/0	t0001	6874	117	16	25	61	3	12	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0002	6875	76	1	18	42	7	8	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0003	6874	58	14	7	37	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0004	6873	12	7	3	0	0	2	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0005	6873	12	3	6	0	2	1	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0006	6872	11	10	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0007	6874	8	0	0	0	1	7	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0008	6873	6	1	2	3	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0009	6876	6	0	1	3	0	2	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0010	6875	4	2	0	2	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	1/0	t0011	6868	4	2	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0012	6877	4	0	0	4	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0013	6875	4	1	0	3	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0014	6874	3	3	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0015	6872	3	3	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0016	6874	3	0	0	3	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0017	6874	3	0	0	0	0	3	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0018	6872	2	2	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0019	6874	2	2	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0020	6874	2	2	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0021	6874	2	0	0	2	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0022	6874	2	0	0	2	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0023	6878	2	0	0	2	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0024	6876	2	0	0	2	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0025	6874	2	0	0	1	0	1	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0026	6875	2	0	1	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327