JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF10_chr1_23959347_23985327	0/0	t0027	6873	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/1	t0028	6874	1	0	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0029	6874	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0030	6874	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0031	6875	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0032	6873	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0033	6873	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0034	6875	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0035	6873	1	0	0	0	1	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0036	6874	1	0	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0037	6874	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0038	6874	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0039	6875	1	0	0	0	0	1	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0040	6875	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0041	6874	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0042	6874	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0043	6872	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0044	6873	1	0	0	0	0	1	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0045	6874	1	0	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0046	6874	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0047	6874	1	0	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0048	6873	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0049	6877	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0050	6877	1	0	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0051	6876	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0052	6876	1	1	0	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0053	6875	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0054	6875	1	0	1	0	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0055	6874	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0056	6874	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0057	6875	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF10_chr1_23959347_23985327	0/0	t0058	6874	1	0	0	1	0	0	copy fasta	SRSF10	chr1	23959347	23985327
SRSF11_chr1_70216380_70258052	0/1	t0001	2507	308	47	61	148	12	39	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0002	2507	11	9	2	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0003	2506	4	4	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0004	2507	3	0	0	0	0	3	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0005	2507	3	0	0	3	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0006	2507	2	2	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0007	2507	1	0	0	1	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	1/0	t0008	2505	1	0	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0009	2507	1	0	1	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0010	2507	1	1	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0011	2507	1	1	0	0	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0012	2507	1	0	0	1	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF11_chr1_70216380_70258052	0/0	t0013	2507	1	0	0	1	0	0	copy fasta	SRSF11	chr1	70216380	70258052
SRSF12_chr6_89090959_89123071	0/0	t0001	2804	112	11	23	67	0	11	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	1/0	t0002	2804	87	22	28	30	3	3	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0003	2804	79	20	16	25	3	15	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0004	2804	24	1	13	0	5	5	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0005	2802	15	8	0	6	0	1	copy fasta	SRSF12	chr6	89090959	89123071