JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF12_chr6_89090959_89123071	0/0	t0006	2803	11	11	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0007	2803	10	0	1	8	0	1	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0008	2802	9	8	1	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0009	2804	5	5	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0010	2802	5	5	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0011	2804	2	0	0	0	2	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0012	2804	2	2	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/1	t0013	2804	1	0	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0014	2804	1	0	0	0	1	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0015	2803	1	0	1	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0016	2804	1	0	1	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0017	2804	1	1	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0018	2804	1	0	0	1	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0019	2804	1	0	0	1	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0020	5592	1	0	0	1	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0021	2803	1	0	0	0	0	1	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0022	2804	1	0	0	1	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0023	2804	1	0	0	1	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0024	2804	1	0	0	0	0	1	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0025	2804	1	0	0	1	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0026	2802	1	1	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF12_chr6_89090959_89123071	0/0	t0027	2802	1	1	0	0	0	0	copy fasta	SRSF12	chr6	89090959	89123071
SRSF1_chr17_57995919_58012246	1/1	t0001	4597	237	38	41	123	10	23	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0002	4597	19	18	1	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0003	4597	14	3	7	0	2	2	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0004	4595	9	3	4	0	1	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0005	4597	7	7	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0006	4597	5	5	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0007	4597	4	0	0	0	2	2	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0008	4597	4	0	0	0	1	3	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0009	4597	4	4	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0010	4596	3	1	1	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0011	4591	3	0	2	0	1	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0012	4595	3	2	1	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0013	4592	3	2	1	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0014	4594	3	3	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0015	4597	2	1	0	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0016	4597	2	0	0	2	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0017	4597	2	1	0	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0018	4597	2	0	2	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0019	4597	1	0	0	0	1	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0020	4597	1	1	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0021	4597	1	1	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0022	4597	1	0	0	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0023	4597	1	0	0	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0024	4597	1	0	0	1	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0025	4597	1	0	0	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0026	4597	1	0	0	1	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0027	4597	1	0	0	1	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0028	4597	1	0	1	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246