JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF1_chr17_57995919_58012246	0/0	t0029	4597	1	0	1	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0030	4597	1	0	0	1	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0031	4597	1	1	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0032	4597	1	0	0	0	0	1	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0033	4597	1	0	0	1	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF1_chr17_57995919_58012246	0/0	t0034	4591	1	1	0	0	0	0	copy fasta	SRSF1	chr17	57995919	58012246
SRSF2_chr17_76729115_76742331	0/1	t0001	1223	239	63	37	104	10	24	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0002	1223	118	5	22	72	6	13	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	1/0	t0003	1223	18	15	2	0	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0004	1223	12	9	0	3	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0005	1223	3	0	3	0	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0006	1223	2	0	0	0	0	2	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0007	1223	2	2	0	0	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0008	1223	2	1	0	0	0	1	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0009	1223	1	1	0	0	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF2_chr17_76729115_76742331	0/0	t0010	1223	1	0	0	1	0	0	copy fasta	SRSF2	chr17	76729115	76742331
SRSF3_chr6_36589362_36610600	1/0	t0001	3734	186	26	48	91	5	15	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0002	3736	89	7	12	56	0	14	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0003	3734	15	15	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0004	3733	13	11	1	0	0	1	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/1	t0005	3733	7	2	4	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0006	3731	6	1	1	4	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0007	3733	6	0	1	1	0	4	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0008	3735	6	4	1	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0009	3731	4	4	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0010	3734	3	0	1	1	0	1	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0011	3734	3	3	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0012	3736	2	0	0	2	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0013	3736	2	0	0	0	2	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0014	3734	2	2	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0015	3734	2	2	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0016	3734	2	1	1	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0017	3736	2	1	1	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0018	3734	2	2	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0019	3734	2	2	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0020	3731	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0021	3734	1	0	0	0	1	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0022	3736	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0023	3734	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0024	3736	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0025	3737	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0026	3736	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0027	3736	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0028	3736	1	0	0	0	0	1	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0029	3734	1	0	1	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0030	3733	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0031	3734	1	0	1	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0032	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0033	3734	1	0	1	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0034	3733	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600