JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF3_chr6_36589362_36610600	0/0	t0035	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0036	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0037	3734	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0038	4050	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0039	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0040	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0041	3733	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0042	3734	1	0	0	0	0	1	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0043	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0044	3734	1	1	0	0	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0045	3736	1	0	0	0	0	1	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0046	3734	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF3_chr6_36589362_36610600	0/0	t0047	3734	1	0	0	1	0	0	copy fasta	SRSF3	chr6	36589362	36610600
SRSF4_chr1_29142743_29186900	1/1	t0001	816	288	55	55	144	5	27	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0002	816	43	8	16	9	1	9	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0003	816	30	21	7	0	2	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0004	816	2	0	0	2	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0005	816	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0006	816	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0007	816	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0008	816	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF4_chr1_29142743_29186900	0/0	t0009	841	1	0	0	1	0	0	copy fasta	SRSF4	chr1	29142743	29186900
SRSF5_chr14_69762142_69777005	1/1	t0001	678	361	83	73	147	14	42	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0002	678	8	8	0	0	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0003	678	2	2	0	0	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0004	678	2	0	0	2	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0005	678	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0006	678	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0007	678	1	0	1	0	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0008	678	1	0	0	1	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF5_chr14_69762142_69777005	0/0	t0009	678	1	1	0	0	0	0	copy fasta	SRSF5	chr14	69762142	69777005
SRSF6_chr20_43452896_43469243	0/1	t0001	3310	92	4	21	58	5	3	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0002	3311	59	5	18	27	2	7	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0003	3304	48	1	6	33	5	3	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	1/0	t0004	3319	34	4	5	18	3	3	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0005	3321	17	2	3	10	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0006	3320	15	0	2	10	0	3	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0007	3312	12	3	2	5	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0008	3307	10	9	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0009	3313	9	3	1	4	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0010	3322	9	0	0	5	0	4	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0011	3314	9	0	0	7	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0012	3318	8	0	0	6	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0013	3304	7	0	6	0	1	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0014	3323	6	0	1	3	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0015	3315	5	0	0	3	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0016	3305	5	0	0	4	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0017	3311	5	0	2	2	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0018	3309	4	0	0	2	1	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0019	3313	3	1	0	2	0	0	copy fasta	SRSF6	chr20	43452896	43469243