JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF6_chr20_43452896_43469243	0/0	t0020	3315	3	3	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0021	3319	3	2	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0022	3328	3	3	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0023	3319	3	3	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0024	3307	3	0	0	3	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0025	3310	2	0	0	0	0	2	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0026	3319	2	2	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0027	3319	2	0	0	1	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0028	3311	2	1	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0029	3306	2	2	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0030	3330	2	0	2	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0031	3331	2	2	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0032	3313	2	1	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0033	3313	2	2	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0034	3303	2	0	2	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0035	3304	2	0	0	2	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0036	3305	2	0	2	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0037	3309	2	0	0	2	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0038	3319	2	2	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0039	3319	2	2	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0040	3319	2	1	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0041	3334	2	1	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0042	3305	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0043	3323	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0044	3304	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0045	3304	1	0	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0046	3312	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0047	3319	1	0	0	0	1	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0048	3318	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0049	3298	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0050	3301	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0051	3305	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0052	3306	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0053	3308	1	0	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0054	3307	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0055	3309	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0056	3309	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0057	3310	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0058	3309	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0059	3311	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0060	3311	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0061	3311	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0062	3312	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0063	3319	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0064	3319	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0065	3319	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0066	3319	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0067	3323	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0068	3329	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0069	3331	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243