JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF6_chr20_43452896_43469243	0/0	t0070	3341	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0071	3328	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0072	3333	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0073	3334	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0074	3340	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0075	3315	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0076	3305	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0077	3306	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0078	3313	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0079	3308	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0080	3305	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0081	3304	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0082	3306	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0083	3307	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0084	3308	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0085	3309	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0086	3311	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0087	3313	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0088	3319	1	0	0	0	0	1	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0089	3319	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0090	3319	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0091	3323	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0092	3323	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0093	3323	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0094	3329	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0095	3303	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0096	3307	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0097	3317	1	0	0	1	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0098	3335	1	1	0	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF6_chr20_43452896_43469243	0/0	t0099	3310	1	0	1	0	0	0	copy fasta	SRSF6	chr20	43452896	43469243
SRSF7_chr2_38738599_38756361	0/0	t0001	1643	255	49	40	139	10	17	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/1	t0002	1642	98	26	27	24	6	14	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0003	1644	29	2	6	12	2	7	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0004	1643	12	0	0	10	0	2	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0005	1639	4	4	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0006	1642	3	2	1	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0007	1643	2	0	0	2	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0008	1642	2	0	0	0	0	2	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0009	1643	2	0	0	2	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0010	18919	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0011	1643	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0012	1643	1	0	0	1	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	1/0	t0013	1640	1	0	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0014	1642	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0015	1643	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0016	1643	1	0	0	1	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0017	18920	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0018	1643	1	0	0	1	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0019	1643	1	0	0	1	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0020	18918	1	0	1	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361