JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF7_chr2_38738599_38756361	0/0	t0021	18919	1	0	0	0	0	1	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0022	18919	1	0	1	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0023	1642	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0024	1642	1	1	0	0	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0025	1643	1	0	0	1	0	0	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0026	1642	1	0	0	0	0	1	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0027	1643	1	0	0	0	0	1	copy fasta	SRSF7	chr2	38738599	38756361
SRSF7_chr2_38738599_38756361	0/0	t0028	1642	1	0	0	0	0	1	copy fasta	SRSF7	chr2	38738599	38756361
SRSF8_chr11_95061919_95076225	0/0	t0001	3467	104	2	20	67	4	11	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/1	t0002	3464	82	7	17	38	4	15	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0003	3477	20	3	7	1	1	8	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0004	3464	15	7	2	4	2	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0005	3464	12	0	3	7	1	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0006	3484	11	11	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0007	3478	10	3	1	4	2	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0008	3479	9	1	6	2	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0009	3476	8	7	0	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0010	3474	8	0	0	7	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0011	3459	8	1	5	2	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0012	3477	7	3	4	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0013	3475	7	2	0	4	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0014	3468	6	1	0	5	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0015	3467	6	0	0	6	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0016	3464	5	5	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0017	3466	5	3	0	2	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0018	3465	4	4	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0019	3465	3	2	1	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0020	3465	3	0	2	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0021	3460	3	0	0	2	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0022	3468	3	3	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0023	3465	3	3	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0024	3467	3	0	0	3	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0025	3467	3	3	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0026	3480	3	0	1	1	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0027	3460	3	0	2	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0028	3460	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0029	3464	2	0	2	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0030	3486	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0031	3485	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0032	3479	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0033	3464	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0034	3475	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0035	3478	2	2	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0036	3464	2	0	2	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0037	3464	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0038	3467	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0039	3464	1	0	0	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0040	3486	1	0	1	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0041	3467	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0042	3460	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225