JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRSF8_chr11_95061919_95076225	0/0	t0043	3464	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0044	3465	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0045	3464	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0046	3460	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0047	3464	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0048	3464	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0049	3476	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0050	3474	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0051	3465	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0052	3467	1	0	0	0	0	1	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0053	3467	1	0	1	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0054	3466	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0055	3460	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0056	3480	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0057	3476	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0058	3467	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0059	3467	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0060	3467	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0061	3467	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0062	3460	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0063	3477	1	0	1	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0064	3467	1	1	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	0/0	t0065	3474	1	0	0	1	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF8_chr11_95061919_95076225	1/0	t0066	3459	1	0	0	0	0	0	copy fasta	SRSF8	chr11	95061919	95076225
SRSF9_chr12_120456672_120474748	1/1	t0001	487	402	87	66	189	16	42	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	t0002	488	33	0	13	14	2	4	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	t0003	487	3	0	0	3	0	0	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	t0004	487	3	3	0	0	0	0	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	t0005	487	2	2	0	0	0	0	copy fasta	SRSF9	chr12	120456672	120474748
SRSF9_chr12_120456672_120474748	0/0	t0006	487	1	0	1	0	0	0	copy fasta	SRSF9	chr12	120456672	120474748
SRXN1_chr20_641615_658200	1/1	t0001	2115	153	23	36	75	3	14	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0002	2114	109	14	16	63	3	13	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0003	2115	43	9	13	7	7	7	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0004	2115	26	5	3	10	0	8	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0005	2115	23	6	11	4	2	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0006	2114	13	0	0	13	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0007	2115	9	9	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0008	2115	7	5	2	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0009	2115	5	5	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0010	2115	5	0	0	0	1	4	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0011	2114	4	0	0	4	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0012	2114	3	3	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0013	2115	3	3	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0014	2114	3	3	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0015	2115	2	0	0	2	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0016	2115	1	0	0	0	0	1	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0017	2115	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0018	2115	1	0	1	0	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0019	2115	1	0	0	1	0	0	copy fasta	SRXN1	chr20	641615	658200
SRXN1_chr20_641615_658200	0/0	t0020	2115	1	1	0	0	0	0	copy fasta	SRXN1	chr20	641615	658200