Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLOC1S6_chr15_45582379_45614708	0/0	t0023	3260	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0024	3260	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0025	3264	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0026	3260	1	0	0	0	0	1	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0027	3260	1	0	0	0	0	1	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	t0028	3260	1	0	1	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLTP1_chr4_122147331_122367752	1/1	t0001	881	321	79	55	141	14	30	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0002	885	6	6	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0003	881	2	1	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0004	881	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0005	881	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0006	881	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0007	881	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0008	881	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0009	881	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	t0010	881	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP2_chr17_28609446_28650158	1/1	t0001	721	307	81	64	129	6	25	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	t0002	708	1	0	0	0	0	1	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	t0003	721	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	t0004	721	1	0	0	1	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP3A_chr6_34787083_34882514	1/0	t0001	5245	84	5	21	37	5	15	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0002	5254	46	1	3	41	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0003	5263	31	9	3	15	1	3	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0004	5245	26	0	1	22	0	3	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0005	5264	20	17	3	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0006	5245	12	11	0	0	1	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0007	5266	8	0	5	0	0	3	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0008	5245	7	0	0	7	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0009	5251	6	0	5	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0010	5266	5	0	2	0	2	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0011	5261	5	3	0	0	0	2	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0012	5263	5	4	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0013	5263	5	0	0	5	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0014	5252	4	4	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0015	5248	4	4	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0016	5245	3	3	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0017	5267	3	2	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0018	5264	3	0	0	1	0	2	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0019	5260	3	3	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0020	5245	2	0	1	0	1	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0021	5266	2	0	0	2	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0022	5257	2	2	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0023	5254	2	0	2	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0024	5254	2	2	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0025	5245	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0026	5245	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0027	5245	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0028	5273	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0029	5270	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0030	5269	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514