JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSBP2_chr5_81407804_81756097	0/0	t0073	7779	1	0	0	0	0	1	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0074	7777	1	0	0	0	0	1	copy fasta	SSBP2	chr5	81407804	81756097
SSBP2_chr5_81407804_81756097	0/0	t0075	7782	1	1	0	0	0	0	copy fasta	SSBP2	chr5	81407804	81756097
SSBP3_chr1_54220432_54411394	0/0	t0001	2083	36	16	4	11	1	4	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0002	2086	36	16	6	7	3	4	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0003	2089	29	3	9	13	1	3	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0004	2086	21	11	4	2	1	3	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0005	2084	20	11	1	3	0	5	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0006	2092	15	7	1	2	0	5	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/1	t0007	2090	12	0	7	3	0	1	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0008	2098	11	1	3	7	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0009	2092	10	1	2	1	1	5	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	1/0	t0010	2086	9	0	2	4	0	2	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0011	2080	6	0	0	3	2	1	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0012	2077	5	0	0	4	0	1	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0013	2086	5	5	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0014	2085	5	2	0	3	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0015	2078	4	0	1	1	1	1	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0016	2085	4	2	2	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0017	2091	4	0	0	4	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0018	2096	4	0	1	2	0	1	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0019	2095	4	0	0	4	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0020	2086	3	2	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0021	2088	3	1	1	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0022	2087	3	0	0	0	1	2	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0023	2080	2	0	0	2	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0024	2086	2	2	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0025	2076	2	2	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0026	2092	2	2	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0027	2098	2	0	1	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0028	2089	2	0	1	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0029	2096	1	0	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0030	2086	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0031	2087	1	1	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0032	2083	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0033	2082	1	1	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0034	2085	1	0	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0035	2083	1	1	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0036	2089	1	0	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0037	2091	1	0	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0038	2089	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0039	2092	1	1	0	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0040	2092	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0041	2098	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0042	2094	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0043	2097	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0044	2101	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0045	2080	1	0	0	0	1	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0046	2089	1	0	1	0	0	0	copy fasta	SSBP3	chr1	54220432	54411394
SSBP3_chr1_54220432_54411394	0/0	t0047	2088	1	0	0	1	0	0	copy fasta	SSBP3	chr1	54220432	54411394