JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSBP4_chr19_18414398_18439562	0/0	t0001	568	165	79	30	31	6	19	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	1/1	t0002	568	127	14	38	51	6	16	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	t0003	568	4	4	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	t0004	568	2	0	0	2	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	t0005	568	2	0	2	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	t0006	568	1	0	0	0	0	1	copy fasta	SSBP4	chr19	18414398	18439562
SSBP4_chr19_18414398_18439562	0/0	t0007	568	1	1	0	0	0	0	copy fasta	SSBP4	chr19	18414398	18439562
SSB_chr2_169793871_169817064	1/1	t0001	424	400	77	71	191	14	45	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	t0002	424	21	16	3	2	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	t0003	424	2	2	0	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	t0004	424	1	1	0	0	0	0	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	t0005	424	1	0	0	0	0	1	copy fasta	SSB	chr2	169793871	169817064
SSB_chr2_169793871_169817064	0/0	t0006	424	1	0	0	1	0	0	copy fasta	SSB	chr2	169793871	169817064
SSC4D_chr7_76384337_76414697	1/0	t0001	1073	256	75	42	108	10	20	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0002	1073	73	0	18	44	1	10	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/1	t0003	1073	31	7	6	6	4	7	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0004	1073	23	16	2	0	1	4	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0005	1073	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0006	1073	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0007	1073	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0008	1073	1	0	0	1	0	0	copy fasta	SSC4D	chr7	76384337	76414697
SSC4D_chr7_76384337_76414697	0/0	t0009	1073	1	0	0	0	0	1	copy fasta	SSC4D	chr7	76384337	76414697
SSC5D_chr19_55483436_55524099	1/0	t0001	256	255	78	38	119	4	15	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/1	t0002	256	148	21	39	55	12	20	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	t0003	257	6	0	3	0	0	3	copy fasta	SSC5D	chr19	55483436	55524099
SSC5D_chr19_55483436_55524099	0/0	t0004	257	3	1	0	2	0	0	copy fasta	SSC5D	chr19	55483436	55524099
SSH1_chr12_108773191_108862583	0/0	t0001	9887	60	6	17	25	1	11	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0002	9883	36	0	6	27	0	3	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	1/0	t0003	9885	35	12	12	0	3	7	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0004	9885	29	0	4	23	0	2	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0005	9884	13	4	0	8	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/1	t0006	9884	10	6	3	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0007	9885	9	8	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0008	9883	7	1	5	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0009	9884	7	7	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0010	9889	6	5	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0011	9884	6	0	3	0	1	2	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0012	9883	5	5	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0013	9889	4	0	0	4	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0014	9885	4	0	0	1	0	3	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0015	9884	4	0	0	0	1	3	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0016	9883	4	4	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0017	9884	3	0	0	3	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0018	9884	3	0	0	3	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0019	9887	2	0	0	2	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0020	9887	2	2	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0021	9888	2	0	0	1	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0022	9885	2	0	0	2	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0023	9886	2	0	0	2	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0024	9884	2	2	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583