JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSH1_chr12_108773191_108862583	0/0	t0075	9885	1	0	0	0	0	1	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0076	9886	1	0	0	0	1	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0077	9885	1	0	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0078	9885	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0079	9881	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0080	9885	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0081	9885	1	0	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0082	9885	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0083	9883	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0084	9885	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0085	9885	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0086	9886	1	0	1	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0087	9885	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0088	9885	1	0	0	0	1	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0089	9888	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0090	9884	1	1	0	0	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0091	9885	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH1_chr12_108773191_108862583	0/0	t0092	9885	1	0	0	1	0	0	copy fasta	SSH1	chr12	108773191	108862583
SSH2_chr17_29620938_29935228	0/0	t0001	5132	71	7	22	23	4	15	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0002	5133	70	20	14	21	2	13	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0003	5134	23	18	5	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0004	5134	8	4	2	0	2	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0005	5133	5	0	3	0	1	1	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0006	5130	4	3	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0007	5134	4	0	0	2	0	2	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0008	5135	4	4	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0009	5133	4	0	2	0	2	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0010	5130	3	3	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0011	5133	3	0	0	0	0	3	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0012	5132	3	0	2	0	1	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0013	5134	3	3	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0014	5134	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0015	5134	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/1	t0016	5133	2	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0017	5134	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0018	5134	2	2	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0019	5134	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0020	5134	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0021	5132	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0022	5133	1	0	0	0	0	1	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0023	5133	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0024	5131	1	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0025	5133	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0026	5132	1	0	1	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0027	5133	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0028	5134	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0029	5133	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0030	5133	1	0	0	0	0	1	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0031	5134	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0032	5132	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228