JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSH2_chr17_29620938_29935228	0/0	t0033	5134	1	1	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	0/0	t0034	5132	1	0	0	1	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH2_chr17_29620938_29935228	1/0	t0035	5132	1	0	0	0	0	0	copy fasta	SSH2	chr17	29620938	29935228
SSH3_chr11_67298530_67317592	1/1	t0001	802	266	49	43	128	13	31	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0002	802	37	35	2	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0003	775	19	1	15	2	1	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0004	802	2	1	0	0	0	1	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0005	802	2	2	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0006	775	2	0	2	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0007	802	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0008	802	1	0	0	0	0	1	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0009	802	1	0	0	0	0	1	copy fasta	SSH3	chr11	67298530	67317592
SSH3_chr11_67298530_67317592	0/0	t0010	802	1	1	0	0	0	0	copy fasta	SSH3	chr11	67298530	67317592
SSMEM1_chr7_130202860_130221844	1/1	t0001	426	314	62	73	130	10	37	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	t0002	426	51	29	11	0	4	7	copy fasta	SSMEM1	chr7	130202860	130221844
SSMEM1_chr7_130202860_130221844	0/0	t0003	426	1	1	0	0	0	0	copy fasta	SSMEM1	chr7	130202860	130221844
SSNA1_chr9_137183676_137195366	1/0	t0001	504	301	59	61	154	8	18	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/1	t0002	504	68	23	10	8	4	22	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/0	t0003	504	12	9	2	0	0	1	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/0	t0004	504	3	2	0	0	0	1	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/0	t0005	504	2	0	2	0	0	0	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/0	t0006	504	1	0	1	0	0	0	copy fasta	SSNA1	chr9	137183676	137195366
SSNA1_chr9_137183676_137195366	0/0	t0007	504	1	1	0	0	0	0	copy fasta	SSNA1	chr9	137183676	137195366
SSPN_chr12_26190573_26239777	0/0	t0001	3800	72	10	2	49	0	11	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0002	3801	53	8	13	24	1	7	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0003	3804	48	0	11	32	2	3	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0004	3802	41	3	8	21	2	7	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0005	3799	28	4	7	12	2	3	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0006	3801	22	17	4	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/1	t0007	3802	12	4	2	3	2	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0008	3800	11	7	0	4	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0009	3802	7	6	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0010	3804	5	1	2	0	2	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0011	3805	5	0	1	4	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0012	3802	3	2	1	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0013	3802	3	2	1	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0014	3799	3	0	0	3	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0015	3802	3	0	2	0	1	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0016	3801	3	0	3	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0017	3799	3	3	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0018	3802	3	3	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0019	3804	3	0	3	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0020	3805	2	0	1	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0021	3802	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0022	3802	2	0	2	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0023	3806	2	0	1	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0024	3824	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0025	3803	2	1	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0026	3800	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0027	3827	2	2	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777