JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSPN_chr12_26190573_26239777	0/0	t0028	3801	2	0	2	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0029	3800	1	0	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0030	3800	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0031	3831	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0032	3821	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	1/0	t0033	3802	1	0	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0034	3825	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0035	3801	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0036	3802	1	0	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0037	3801	1	0	1	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0038	3802	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0039	3802	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0040	3804	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0041	3818	1	0	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0042	3799	1	0	0	0	1	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0043	3805	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0044	3820	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0045	3803	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0046	3829	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0047	3819	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0048	3821	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0049	3827	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0050	3829	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0051	3820	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0052	3819	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0053	3801	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0054	3802	1	0	0	0	1	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0055	3800	1	0	1	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0056	3801	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0057	3803	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0058	3801	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0059	3797	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0060	3780	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0061	3823	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0062	3819	1	1	0	0	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0063	3800	1	0	0	1	0	0	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0064	3800	1	0	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0065	3802	1	0	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSPN_chr12_26190573_26239777	0/0	t0066	3800	1	0	0	0	0	1	copy fasta	SSPN	chr12	26190573	26239777
SSR1_chr6_7276143_7318199	0/0	t0001	8801	63	3	16	36	4	4	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0002	8801	49	5	12	26	0	6	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0003	8795	41	2	6	29	0	4	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0004	8802	34	11	3	19	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/1	t0005	8801	19	12	3	0	0	3	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0006	8795	17	0	4	4	3	6	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0007	8800	16	6	1	8	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0008	8802	12	0	3	6	0	3	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0009	8789	10	0	5	0	2	3	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0010	8800	9	0	4	5	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0011	8796	8	0	1	7	0	0	copy fasta	SSR1	chr6	7276143	7318199