JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSR1_chr6_7276143_7318199	0/0	t0012	8789	8	2	0	6	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0013	8803	8	0	1	7	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0014	8795	7	0	0	7	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0015	8795	6	0	0	6	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0016	8795	5	0	0	2	0	3	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0017	8801	5	0	0	5	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0018	8789	5	4	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0019	8802	5	5	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0020	8795	4	1	1	2	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0021	8795	4	0	3	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0022	8796	4	0	3	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0023	8801	4	0	2	0	2	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0024	8796	3	0	1	1	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0025	8790	3	2	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0026	8801	3	3	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0027	8802	3	0	0	3	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0028	8801	3	3	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0029	8801	3	1	1	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0030	8802	3	3	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0031	8802	3	0	0	3	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0032	8795	2	0	0	2	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0033	8790	2	2	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0034	8789	2	0	0	2	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0035	8789	2	2	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0036	8796	2	0	0	0	0	2	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0037	8790	2	1	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0038	8801	2	0	0	1	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0039	8801	2	1	0	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0040	8801	2	1	0	0	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0041	8802	2	2	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0042	8803	2	2	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0043	8795	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0044	8796	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0045	8796	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0046	8802	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0047	8802	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0048	8802	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0049	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0050	8796	1	0	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0051	8797	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0052	8789	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0053	8790	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0054	8789	1	0	0	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0055	8801	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0056	8795	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0057	8796	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0058	8801	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0059	8789	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0060	8801	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0061	8791	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199