Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLTP3A_chr6_34787083_34882514	0/0	t0031	5267	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/1	t0032	5269	1	0	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0033	5269	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0034	5263	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0035	5263	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0036	5263	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0037	5260	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0038	5257	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0039	5257	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0040	5254	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0041	5252	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0042	5254	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0043	5249	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0044	5249	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0045	5245	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	t0046	5254	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3B_chr12_100032072_100147874	1/1	t0001	804	187	77	48	34	6	20	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	t0002	804	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLVRA_chr7_43753680_43812342	1/1	t0001	184	334	82	67	136	15	32	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	t0002	184	80	8	15	52	1	4	copy fasta	BLVRA	chr7	43753680	43812342
BLVRB_chr19_40442768_40470745	1/1	t0001	179	315	87	60	101	17	48	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	t0002	178	43	9	12	21	1	0	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	t0003	179	4	0	0	4	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLZF1_chr1_169363195_169393305	0/1	t0001	1322	199	54	27	91	7	19	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	1/0	t0002	1322	88	28	23	16	6	14	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0003	1322	37	3	2	25	0	7	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0004	1322	32	1	19	8	3	1	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0005	1322	3	3	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0006	1322	2	0	1	0	0	1	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0007	1322	2	2	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0008	1322	1	0	0	1	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0009	1322	1	0	0	1	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	t0010	1322	1	1	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BMAL1_chr11_13272790_13392266	1/1	t0001	907	302	75	49	136	11	29	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	t0002	907	4	4	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	t0003	907	3	0	2	0	1	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	t0004	907	2	2	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	t0005	907	1	1	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	t0006	907	1	0	0	0	0	1	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	t0007	907	1	0	1	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL2_chr12_27327836_27430286	0/0	t0001	4991	99	24	26	39	3	7	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0002	4992	88	13	9	49	3	14	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0003	4992	21	0	5	8	3	5	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0004	4988	19	0	0	19	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0005	4992	9	8	1	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0006	4990	6	1	0	4	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0007	4988	5	2	0	0	0	3	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0008	4991	4	1	2	0	1	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/1	t0009	4988	4	0	0	0	0	3	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	t0010	4993	3	0	0	3	0	0	copy fasta	BMAL2	chr12	27327836	27430286