JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSR1_chr6_7276143_7318199	0/0	t0062	8801	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0063	8802	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0064	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0065	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0066	8802	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0067	8802	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0068	8802	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0069	8801	1	0	0	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0070	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0071	8797	1	0	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	1/0	t0072	8801	1	0	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0073	8801	1	0	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0074	8795	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0075	8803	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0076	8800	1	0	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0077	8800	1	0	0	0	1	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0078	8802	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0079	8801	1	0	0	0	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0080	8802	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0081	8803	1	0	0	0	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0082	8800	1	0	1	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0083	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0084	8800	1	0	0	0	0	1	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0085	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0086	8801	1	0	0	1	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR1_chr6_7276143_7318199	0/0	t0087	8802	1	1	0	0	0	0	copy fasta	SSR1	chr6	7276143	7318199
SSR2_chr1_156004048_156025951	1/1	t0001	557	337	78	66	132	16	43	copy fasta	SSR2	chr1	156004048	156025951
SSR2_chr1_156004048_156025951	0/0	t0002	557	15	13	0	1	0	1	copy fasta	SSR2	chr1	156004048	156025951
SSR2_chr1_156004048_156025951	0/0	t0003	557	1	0	0	1	0	0	copy fasta	SSR2	chr1	156004048	156025951
SSR2_chr1_156004048_156025951	0/0	t0004	557	1	0	0	0	0	1	copy fasta	SSR2	chr1	156004048	156025951
SSR2_chr1_156004048_156025951	0/0	t0005	557	1	1	0	0	0	0	copy fasta	SSR2	chr1	156004048	156025951
SSR2_chr1_156004048_156025951	0/0	t0006	557	1	0	0	0	0	1	copy fasta	SSR2	chr1	156004048	156025951
SSR3_chr3_156534553_156560117	0/0	t0001	3682	108	34	18	46	3	7	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0002	3670	43	1	0	28	5	9	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0003	3682	30	0	5	25	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0004	3683	24	12	2	6	0	4	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	1/1	t0005	3679	22	5	2	3	3	7	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0006	3677	20	0	10	6	2	2	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0007	3670	15	1	1	11	0	2	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0008	3671	12	0	1	9	1	1	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0009	3670	10	0	5	5	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0010	3683	10	0	0	10	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0011	3671	9	1	0	8	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0012	3678	8	6	2	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0013	3681	8	3	0	5	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0014	3684	8	0	3	0	0	5	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0015	3670	7	0	0	7	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0016	3669	6	6	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0017	3680	5	5	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0018	3682	5	0	2	3	0	0	copy fasta	SSR3	chr3	156534553	156560117