JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSR3_chr3_156534553_156560117	0/0	t0019	3671	4	0	0	4	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0020	3679	4	3	1	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0021	3683	4	0	2	0	0	2	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0022	3680	3	0	0	1	0	2	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0023	3683	3	0	2	0	0	1	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0024	3672	2	0	0	2	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0025	3679	2	2	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0026	3670	2	0	1	1	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0027	3679	2	0	0	2	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0028	3670	1	0	1	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0029	3679	1	0	1	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0030	3680	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0031	3679	1	0	0	1	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0032	3679	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0033	3677	1	0	0	0	1	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0034	3680	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0035	3678	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0036	3670	1	0	0	1	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0037	3670	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0038	3670	1	0	0	1	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0039	3682	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0040	3681	1	0	0	0	1	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0041	3679	1	0	0	1	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0042	3680	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0043	3682	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0044	3681	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0045	3682	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0046	3670	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0047	3670	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0048	3684	1	0	1	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0049	3682	1	0	0	0	0	1	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0050	3680	1	1	0	0	0	0	copy fasta	SSR3	chr3	156534553	156560117
SSR3_chr3_156534553_156560117	0/0	t0051	3673	1	0	0	0	0	1	copy fasta	SSR3	chr3	156534553	156560117
SSR4_chrX_153789668_153803499	1/1	t0001	87	309	80	54	132	9	32	copy fasta	SSR4	chrX	153789668	153803499
SSRP1_chr11_57320988_57340892	1/0	t0001	702	314	76	57	126	17	37	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/1	t0002	702	27	14	10	0	1	1	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	t0003	703	20	3	5	6	0	6	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	t0004	702	4	4	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	t0005	702	2	0	0	2	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	t0006	702	1	0	0	1	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	t0007	702	1	1	0	0	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSRP1_chr11_57320988_57340892	0/0	t0008	702	1	0	0	1	0	0	copy fasta	SSRP1	chr11	57320988	57340892
SSTR1_chr14_38202904_38218067	0/0	t0001	3215	82	4	13	53	4	8	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	1/0	t0002	3215	68	9	24	26	3	5	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0003	3215	66	5	0	59	0	2	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/1	t0004	3215	64	10	13	14	4	22	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0005	3215	48	6	9	30	1	2	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0006	3215	42	18	7	15	1	1	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0007	3215	12	2	5	0	3	2	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0008	3215	11	9	2	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067