JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR1_chr14_38202904_38218067	0/0	t0009	3215	8	7	1	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0010	3215	8	7	1	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0011	3215	4	0	4	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0012	3198	4	0	0	4	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0013	3215	4	4	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0014	3215	4	4	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0015	3215	3	2	1	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0016	3215	3	3	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0017	3215	2	0	0	2	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0018	3215	2	0	0	1	0	1	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0019	3215	2	2	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0020	3215	2	0	0	0	0	2	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0021	3215	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0022	3215	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0023	3204	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0024	3215	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0025	3215	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0026	3215	1	0	1	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0027	3215	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0028	3215	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0029	3215	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0030	3215	1	0	0	0	0	1	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0031	3215	1	0	1	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0032	3226	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0033	3215	1	0	0	1	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0034	3198	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0035	3198	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0036	3215	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR1_chr14_38202904_38218067	0/0	t0037	3215	1	1	0	0	0	0	copy fasta	SSTR1	chr14	38202904	38218067
SSTR2_chr17_73160010_73181633	0/0	t0001	6576	28	0	6	17	2	3	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0002	6572	24	0	0	24	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0003	6575	19	0	6	7	4	2	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0004	6578	18	2	4	8	0	4	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0005	6577	13	1	3	6	0	3	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0006	6576	12	1	5	1	1	4	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0007	6577	9	1	2	2	1	3	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0008	6597	8	0	1	7	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0009	6570	7	7	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0010	6577	7	1	3	1	2	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0011	6577	7	1	1	2	0	3	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0012	6580	6	0	1	3	2	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0013	6578	6	0	1	3	0	2	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0014	6578	6	2	1	1	1	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0015	6578	5	0	2	2	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0016	6578	5	0	4	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0017	6575	5	2	1	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0018	6578	5	0	0	5	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0019	6579	5	0	0	5	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0020	6577	4	0	3	0	1	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0021	6577	4	1	0	2	0	1	copy fasta	SSTR2	chr17	73160010	73181633