JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SSTR2_chr17_73160010_73181633	0/0	t0022	6572	4	0	0	4	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0023	6596	4	0	0	4	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0024	6581	4	0	0	4	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0025	6578	3	3	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0026	6579	3	1	0	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0027	6575	3	0	0	3	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0028	6572	3	0	0	3	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0029	6571	3	0	0	3	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0030	6571	3	0	0	3	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0031	6602	3	0	0	3	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0032	6577	3	0	0	3	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0033	6573	3	3	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0034	6573	3	2	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0035	6574	3	3	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0036	6570	3	3	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0037	6571	3	2	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0038	6578	2	0	2	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0039	6580	2	1	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0040	6578	2	1	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0041	6577	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0042	6579	2	0	0	0	0	2	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0043	6577	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0044	6578	2	0	0	1	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/1	t0045	6576	2	0	0	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0046	6578	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	1/0	t0047	6576	2	1	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0048	6578	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0049	6577	2	0	0	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0050	6574	2	0	0	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0051	6574	2	0	1	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0052	6569	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0053	6573	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0054	6575	2	0	2	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0055	6575	2	1	1	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0056	6573	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0057	6571	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0058	6571	2	0	2	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0059	6572	2	0	2	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0060	6574	2	0	1	0	1	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0061	6566	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0062	6571	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0063	6597	2	0	0	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0064	6579	2	0	0	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0065	6578	2	0	0	1	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0066	6577	2	0	1	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0067	6576	2	0	0	2	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0068	6575	2	0	1	1	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0069	6570	2	2	0	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0070	6560	2	0	1	0	0	1	copy fasta	SSTR2	chr17	73160010	73181633
SSTR2_chr17_73160010_73181633	0/0	t0071	6574	2	0	2	0	0	0	copy fasta	SSTR2	chr17	73160010	73181633